Publications

Quantitative longitudinal analysis of T cell receptor repertoire expression in HIV-infected patients on antiretroviral and interleukin-2 therapy.

Sriram U, Wong M, Caillier SJ, Hecht FM, Elkins MK, Levy JA, Oksenberg JR, Baranzini SE

AIDS research and human retroviruses, 2007

Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans.

Fernald GH, Knott S, Pachner A, Caillier SJ, Narayan K, Oksenberg JR, Mousavi P, Baranzini SE

Journal of immunology (Baltimore, Md. : 1950), 2007

The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse.

Pedemonte E, Benvenuto F, Casazza S, Mancardi G, Oksenberg JR, Uccelli A, Baranzini SE

BMC genomics, 2007

Peroxisome proliferator-activated receptor (PPAR)alpha expression in T cells mediates gender differences in development of T cell-mediated autoimmunity.

Dunn SE, Ousman SS, Sobel RA, Zuniga L, Baranzini SE, Youssef S, Crowell A, Loh J, Oksenberg J, Steinman L

The Journal of experimental medicine, 2007

Systems-based medicine approaches to understand and treat complex diseases. The example of multiple sclerosis.

Baranzini SE

Autoimmunity, 2006

Heterogeneity at the HLA-DRB1 locus and risk for multiple sclerosis.

Barcellos LF, Sawcer S, Ramsay PP, Baranzini SE, Thomson G, Briggs F, Cree BC, Begovich AB, Villoslada P, Montalban X, Uccelli A, Savettieri G, Lincoln RR, DeLoa C, Haines JL, Pericak-Vance MA, Compston A, Hauser SL, Oksenberg JR

Human molecular genetics, 2006

Predictive modeling of therapy response in multiple sclerosis using gene expression data.

Mostafavi S, Baranzini S, Oksernberg J, Mousavi P

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2006

Mapping gene activity in complex disorders: Integration of expression and genomic scans for multiple sclerosis.

Fernald GH, Yeh RF, Hauser SL, Oksenberg JR, Baranzini SE

Journal of neuroimmunology, 2005

Modular transcriptional activity characterizes the initiation and progression of autoimmune encephalomyelitis.

Baranzini SE, Bernard CC, Oksenberg JR

Journal of immunology (Baltimore, Md. : 1950), 2005

Genomics and new targets for multiple sclerosis.

Baranzini SE, Oksenberg JR

Pharmacogenomics, 2005

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