Publications

Short-chain fatty acid producers in the gut are associated with pediatric multiple sclerosis onset.

Schoeps VA, Zhou X, Horton MK, Zhu F, McCauley KE, Nasr Z, Virupakshaiah A, Gorman MP, Benson LA, Weinstock-Guttman B, Waldman A, Banwell BL, Bar-Or A, Marrie RA, van Domselaar G, O'Mahony J, Mirza AI, Bernstein CN, Yeh EA, Casper TC, Lynch SV, Tremlett H, Baranzini S, Waubant E, US Network of Pediatric MS Centers

Annals of clinical and translational neurology, 2023

An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges.

Fecho K, Bizon C, Issabekova T, Moxon S, Thessen AE, Abdollahi S, Baranzini SE, Belhu B, Byrd WE, Chung L, Crouse A, Duby MP, Ferguson S, Foksinska A, Forero L, Friedman J, Gardner V, Glusman G, Hadlock J, Hanspers K, Hinderer E, Hobbs C, Hyde G, Huang S, Koslicki D, Mease P, Muller S, Mungall CJ, Ramsey SA, Roach J, Rubin I, Schurman SH, Shalev A, Smith B, Soman K, Stemann S, Su AI, Ta C, Watkins PB, Williams MD, Wu C, Xu CH, Biomedical Data Translator Consortium

Journal of clinical and translational science, 2023

Inflammatory and neurodegenerative serum protein biomarkers increase sensitivity to detect disease activity in multiple sclerosis.

Chitnis T, Qureshi F, Gehman VM, Becich M, Bove R, Cree BAC, Gomez R, Hauser SL, Henry RG, Katrib A, Lokhande H, Paul A, Caillier SJ, Santaniello A, Sattarnezhad N, Saxena S, Weiner H, Yano H, Baranzini SE

medRxiv : the preprint server for health sciences, 2023

A Predictive Autoantibody Signature in Multiple Sclerosis.

Zamecnik CR, Sowa GM, Abdelhak A, Dandekar R, Bair RD, Wade KJ, Bartley CM, Tubati A, Gomez R, Fouassier C, Gerungan C, Alexander J, Wapniarski AE, Loudermilk RP, Eggers EL, Zorn KC, Ananth K, Jabassini N, Mann SA, Ragan NR, Santaniello A, Henry RG, Baranzini SE, Zamvil SS, Bove RM, Guo CY, Gelfand JM, Cuneo R, von Büdingen HC, Oksenberg JR, Cree BA, Hollenbach JA, Green AJ, Hauser SL, Wallin MT, DeRisi JL, Wilson MR

medRxiv : the preprint server for health sciences, 2023

Early detection of Parkinson's disease through enriching the electronic health record using a biomedical knowledge graph.

Soman K, Nelson CA, Cerono G, Goldman SM, Baranzini SE, Brown EG

Frontiers in medicine, 2023

Integration of epigenetic and genetic profiles identifies multiple sclerosis disease-critical cell types and genes.

Ma Q, Shams H, Didonna A, Baranzini SE, Cree BAC, Hauser SL, Henry RG, Oksenberg JR

Communications biology, 2023

The scalable precision medicine open knowledge engine (SPOKE): A massive knowledge graph of biomedical information.

Morris JH, Soman K, Akbas RE, Zhou X, Smith B, Meng EC, Huang CC, Cerono G, Schenk G, Rizk-Jackson A, Harroud A, Sanders L, Costes SV, Bharat K, Chakraborty A, Pico AR, Mardirossian T, Keiser M, Tang A, Hardi J, Shi Y, Musen M, Israni S, Huang S, Rose PW, Nelson CA, Baranzini SE

Bioinformatics (Oxford, England), 2023

Time-aware Embeddings of Clinical Data using a Knowledge Graph.

Soman K, Nelson CA, Cerono G, Baranzini SE

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2023

Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course.

iMSMS Consortium. Electronic address: [email protected], iMSMS Consortium

Cell, 2022

The role of the gut microbiota in multiple sclerosis.

Correale J, Hohlfeld R, Baranzini SE

Nature reviews. Neurology, 2022

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