Publications

Knowledge Network Embedding of Transcriptomic Data from Spaceflown Mice Uncovers Signs and Symptoms Associated with Terrestrial Diseases.

Nelson CA, Acuna AU, Paul AM, Scott RT, Butte AJ, Cekanaviciute E, Baranzini SE, Costes SV

Life (Basel, Switzerland), 2021

Gut microbiota-specific IgA+ B cells traffic to the CNS in active multiple sclerosis.

Pröbstel AK, Zhou X, Baumann R, Wischnewski S, Kutza M, Rojas OL, Sellrie K, Bischof A, Kim K, Ramesh A, Dandekar R, Greenfield AL, Schubert RD, Bisanz JE, Vistnes S, Khaleghi K, Landefeld J, Kirkish G, Liesche-Starnecker F, Ramaglia V, Singh S, Tran EB, Barba P, Zorn K, Oechtering J, Forsberg K, Shiow LR, Henry RG, Graves J, Cree BAC, Hauser SL, Kuhle J, Gelfand JM, Andersen PM, Schlegel J, Turnbaugh PJ, Seeberger PH, Gommerman JL, Wilson MR, Schirmer L, Baranzini SE

Science immunology, 2020

Mendelian randomization study shows no causal effects of serum urate levels on the risk of MS.

Harroud A, Richards JB, Baranzini SE

Neurology(R) neuroimmunology & neuroinflammation, 2020

Levels of brain-derived neurotrophic factor in patients with multiple sclerosis.

Naegelin Y, Saeuberli K, Schaedelin S, Dingsdale H, Magon S, Baranzini S, Amann M, Parmar K, Tsagkas C, Calabrese P, Penner IK, Kappos L, Barde YA

Annals of clinical and translational neurology, 2020

SARS-CoV-2 meta-interactome suggests disease-specific, autoimmune pathophysiologies and therapeutic targets.

Bellucci G, Ballerini C, Mechelli R, Bigi R, Rinaldi V, Reniè R, Buscarinu MC, Baranzini SE, Madireddy L, Matarese G, Salvetti M, Ristori G

F1000Research, 2020

Vitamin D Regulates MerTK-Dependent Phagocytosis in Human Myeloid Cells.

Clarke J, Yaqubi M, Futhey NC, Sedaghat S, Baufeld C, Blain M, Baranzini S, Butovsky O, Antel J, White JH, Healy LM

Journal of immunology (Baltimore, Md. : 1950), 2020

Serum antibodies to phosphatidylcholine in MS.

Sádaba MC, Rothhammer V, Muñoz Ú, Sebal C, Escudero E, Kivisäkk P, Garcia Sanchez MI, Izquierdo G, Hauser SL, Baranzini SE, Oksenberg JR, Álvarez-Lafuente R, Bakshi R, Weiner HL, Quintana FJ

Neurology(R) neuroimmunology & neuroinflammation, 2020

microRNA and exosome profiling in multiple sclerosis.

Mycko MP, Baranzini SE

Multiple sclerosis (Houndmills, Basingstoke, England), 2020

Genetic variation across RNA metabolism and cell death gene networks is implicated in the semantic variant of primary progressive aphasia.

Bonham LW, Steele NZR, Karch CM, Broce I, Geier EG, Wen NL, Momeni P, Hardy J, Miller ZA, Gorno-Tempini ML, Hess CP, Lewis P, Miller BL, Seeley WW, Manzoni C, Desikan RS, Baranzini SE, Ferrari R, Yokoyama JS

Scientific reports, 2019

Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings.

Nelson CA, Butte AJ, Baranzini SE

Nature communications, 2019

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